5' (donor) GC splice site bayesian sensor

Please refer to the recent article in Biology Direct journal. If you find this sensor useful in your research, please cite:
Method of predicting Splice Sites based on signal interactions
Alexander Churbanov, Igor Rogozin, Jitender Deogun and Hesham Ali
Biology Direct 2006, 1:10

The sensor topology has been derived from the UCSC multiple genome alignments of 23 tetrapoda organisms in a way similar to the methods section of:
Accumulation of GC donor splice signals in mammals
Alexander Churbanov, Stephen Winters-Hill, Eugene Koonin, Igor Rogozin
Biology Direct 2008, Jul 9;3 (1):30

Your input should look similar to this, with the most conserved dinucleotide GC present at fourth and fifth consensus positions. FASTA id and comments may vary. You can also input ordinary FASTA file, similar to this. In this case all putative splice sites will be scored with corresponding position of first intronic nucleotide placed after FASTA id. Expected input of the program is pre-mRNA sequence, a single-stranded molecule.

The resulting prediction displays in the following format (if query was in FASTA format):

>{FASTA id}:{Signal position} {FASTA description}
{Signal oligo}     BAYESIAN:{Raw signal score} {Signal significance [0->1]}
           

Input your query in FASTA format here: