Translation Initiation Site (TIS) bayesian sensor

Please refer to the recent article in Biology Direct journal, the reviewers' comments section explains the sensor topology. If you find this sensor useful in your research, please cite:
Method of predicting Splice Sites based on signal interactions
Alexander Churbanov, Igor Rogozin, Jitender Deogun and Hesham Ali
Biology Direct 2006, 1:10, page 20/23

The TIS sensor has been trained on the set of human, mouse and rat 5'UTRs. Your input should look similar to this, with the most conserved dinucleotide AUG present at seventh, eighth and nineth consensus positions. FASTA id and comments may vary. Input might also be an ordinary FASTA file, similar to this. In this case all putative TIS will be scored with corresponding position of first nucleotide in AUG triplet placed after FASTA id. In this example TIS is located 50 nucleotides before the each sequence end. Expected input of the program is an mRNA sequence, a single-stranded molecule.

The resulting prediction displays in the following format (if query was in FASTA format):

>{FASTA id}:{Signal position} {FASTA description}
{Signal oligo}     BAYESIAN:{Raw signal score} {Signal significance [0->1]}
           

Input your query in FASTA format here: