GIGOgene engine

  • A. Tchourbanov, D. Quest, H. Ali, M. Pauley, and R. Norgren
    A New Approach for Gene Annotation Using Unambiguous Sequence Joining,
    2003 IEEE Computational Systems Bioinformatics Conference (CSB'03), Aug.2003,
    pp.353-362
  • Alexander Churbanov, Mark Pauley, Daniel Quest and Hesham Ali,
    A method of precise mRNA/DNA homology-based gene structure prediction,
    BMC Bioinformatics, 6(2005), no.261

Your mRNA input should look similar to this, and DNA database should look like this. You may leave DNA database field blank and choose either human or mouse NCBI genomic phase 3 database as of summer 2005.

mRNA: Input mRNA your query in FASTA format here:

or file to upload:

DNA database:
DNA FASTA file: Input DNA your query in FASTA format here:

or file to upload:

or choose standard genomic DNA NCBI database: Human phase 3
Mouse phase 3

Some system parameters:
General settings: Show detailed gene structure
Filter PolyA
Write global prediction

BLAST result filtering threshold: Bitscore:
Expectation:

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